Unless you need video switching for 2 sources, I would just use direct connections to your display device. As far as the audio, your best connection would be to use the 7.1 analogs between your player and the 990. Using the digital optical/coaxial connections for audio, you will get normal DTS and DD fine, though any of the higher resolution audio formats will have to be in PCM.

If you want to view the 990 screen menus, you will need a component, composite, or s-video connection to your display device.
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Current Setup:
Samsung HL61A750 LED DLP RPTV
Marantz SR5004 AVR / Outlaw 7075 Amp
L/C/R: Ascend Acoustics 340M/C/M
L&R Surrounds: Ascend Acoustics CBM 170
SVS 25-31PC
Panasonic BD55K Blu-Ray Player
Dishnetwork VIP722 HD/PVR.