I have both a digital coax cable, and an RCA pair, from the STB to the 990 for audio.

Video is via component, switched through the 990.

Good idea on the PL II, I'll try that. I just went down to look at the back of the STB, my daughter is watching the original Poseiden Adventure, and I was switching surround modes, and PL II mode definitely is wrong...Red Buttons' voice was strong in the right channel and it just sounds bad. Watchable, but not up to my standard.
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Home Theater Side:
Outlaw 975
Outlaw 7075
Panasonic TC P50ST60 plasma TV
Oppo BD-103 blu ray
LG-LST3510 OTA STB
Channel Master CM-4221 HD UFH antenna
Monster HTS 2600 mk.II power management

Audio Only Side:
McCormack RLD-1 Preamp (has theater pass-thru)
Onkyo CD Player LX-7555
Thorens TD 320 MkII

Speakers:
Vandersteen 1C, VCC, 2Wq
Cambridge Soundworks surrounds