As I understand it, when the screen says only Dolby Digital , the 990 is simlpy decoding the information from the DVD. When it says Pro logic II, it is processing the signal to matrix out the various channels. You can always get to Pro Logic II by toggeling the Dolby Modes button on the 990 remote.
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HT:
990/770
Oppo BD83SE
Pioneer Elite DV-47A
Magnavox HDMR513h DVR/DVD-R
Sony DVD megachangers-2
Sony CD megachangers-2
Monster power centers-2
Sony 48" rear projection SDTV
Roku video player
JVC AL-A158 Turntable
Polk RT-2000s,CS-650,XS-650s,RT80s
LFM-1EX
Hsu VTF-1
12" Velodyne
Family room:
OPPO 970
Sony 32" direct view HDTV
Denon 3801
Rolk RMs