og33,
I had the same issue with the first second of audio from CD's over a digital connection.
Check the CD input and make sure "Auto-Poll" is turned off. In fact, if you have digital input only for your Video input make sure it's off there as well.
What Auto-Poll does is automatically switch from digital to analog input if the digital signal goes away. If your sources are digital only, there's no need to use it.
When I turned Auto-Poll off, no more lost first second of music from CD's and no one second dropouts when changing channels.
Hope this helps,
Tony.
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Outlaw 976, Outlaw 7700, Pro-Ject Phono Box S
Sonus Faber Domus Grand Piano (F&C), Niles HDFX (Surr. & Rear Surr.), Outlaw LFM-1 Plus, Velodyne SMS-1
Sonos multi room audio
Video: Sony KDL-46V2500, OPPO BDP-103, TiVo Premiere XL4
2-channel: Outlaw RR2150, SF Concerto Home, Outlaw LFM-2