ahh..I did the manual setup using those tones. The poster mentioned the "75dB" tones and that confused me. That doesn't allow the gain of the preamp output to be pushed higher though. It just affects the balance between the various preamp channel outputs.
My trouble with the Threshold amp was that even at full pre amp gain on the 990, there wasn't sufficient volume coming out of the Threshold to the magnepan speakers. I don't listen at ear splitting levels either. It simply couldn't drive the threshold properly.
The fact that switching the power amp to an Adcom 555II removed that problem, indicates a possible incompatibility between the 990 and the Threshold in regards to maximum output voltage capability of the 990, and input requirements for full power on the Threshold.
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Main system:
Integra dhc 9.9
Threshold SA/4e pure class A
Emotiva XPA-1 (2), XPA-5
(2) Threshold S200's
Thiel 3.6 main speakers
(2)Velodyne F1500r subs
Polk RTI28 surrounds
B&W HTM center
OPPO BDP-83 universal player
Samsung HLT6187 led DLP