I don't know about the 990, but very few items are actually fully balanced throughout. My guess is that the 990 is not and only the output is balanced. I design both Medical and commercial electronics and the question of whether to use a balanced design always comes up. In general given the state of electronics today there is little benefit in having a system fully balanced througout. Have interconnects balanced makes sense as common mode noise is reduced as is any external noise introduced in the cable run.
I'm not saying that there is not a benefit is some applications, but with the high quality of solid state IC's it is minimal in most applications. In fact if the balanced design is implemented haphazardly, it will actually make the situation worse.
As a rule of thumb, noisy environments (like long cable runs) benefit from fully balanced, close proximity quiet systems do not.
BTW it also applies to digital as well, hence the use of AES/EBU.
I am taking a very simple approach but like most things, whether to fully balance or not is complex and a matter of design criteria.