Thanks for all of the replys and suggestions. When changing the subwoofer cable to a different output I noticed, like a dummy, that I had plugged the subwoofer cable back in to the coax connection not the sub out. Voila, the sub is fixed, however I still can't toggle the subwoofer on and off in the setup menu. Not to worry, I plan on leaving it on anyway just wanted to pass on the issue.

Thanks again to all!